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View Structure Prediction Details

Protein: gi|8953748, gi|1...
Organism: Arabidopsis thaliana
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8953748, gi|1....

Description E-value Query
Range
Subject
Range
gi|15228863, gi|... - gi|9279699|dbj|BAB01256.1| unnamed protein product [Arabidopsis thaliana], gi|15228863|ref|NP_188920...
581.0 [0..13] [452..9]
gi|92871212 - gi|92871212|gb|ABE80297.1| Protein of unknown function DUF828, plant [Medicago truncatula]
461.0 [0..15] [452..19]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR  60
   61 FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM ERIMAQSPEI SSPRTSGRLS 120
  121 HSSFTDSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PISPSDIDDF KQFYRVSPSF NGHIRGSSAI PGTAGGSKTV GRWLKDRREK KREETRAQNA  60
   61 QLHAAVSVAG VAAAVAAIAA ATASQSSSGT DEQVAKNDSA VASAATLVAA KCVEAAEIMG 120
  121 ADREHLASVV SSAVNVRSAG DIMTLTAAAA TALRGAAQLK ARALKEVWNI AAVIPVDKGT 180
  181 PKGGGGGYRG GELAPVDNFL GICSKELLAK G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [340-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CELLKRTRKG DLHWKVVSIY INRTKQVILK TKSKHVAGTI TKKKKNVVVG LVKGLPAWPG  60
   61 REMLEGGENL RYFGLKTVEK RVIEFECKSQ REYDLWTQGV SMLLSIASDR KHKC

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 69.244125
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.691 N/A N/A d.223.1 Polo domain
View Download 0.672 N/A N/A d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.607 N/A N/A d.56.1 GroEL-intermediate domain like
View Download 0.598 N/A N/A b.55.1 PH domain-like
View Download 0.598 N/A N/A b.55.1 PH domain-like
View Download 0.565 N/A N/A b.29.1 Concanavalin A-like lectins/glucanases
View Download 0.565 N/A N/A b.29.1 Concanavalin A-like lectins/glucanases
View Download 0.520 N/A N/A d.199.1 DNA-binding C-terminal domain of the transcription factor MotA
View Download 0.518 N/A N/A b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.425 N/A N/A b.55.1 PH domain-like
View Download 0.423 N/A N/A b.55.1 PH domain-like
View Download 0.413 N/A N/A b.29.1 Concanavalin A-like lectins/glucanases


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle