| Protein: | SIGE_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 517 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIGE_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
356.0 | [0..3] | [516..57] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK 60
61 HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA AARLESIYKL SPATTTLVED 120
121 DVEDG
|
| Detection Method: |  |
| Confidence: | 41.522879 |
| Match: | 1sigA |
| Description: | CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [126-517] |
1 11 21 31 41 51
| | | | | |
1 GSKAKVSRRR KRKESGEEKK VVVRNNVKKE KRMSLDKRIA LKRNVQEKPV VASVDKKVTK 60
61 RQQEEEKIER LVRDYSASND IVSLDWKKMK IPPVLSSTEH AWLFKLMQPM KALLEVKDVL 120
121 QKSLGREPRE AEIAGEINMT AGEVKKKIEI GRAARNKLIK HNLRLVLFVM NKYFHEFTNG 180
181 PKFQDLCQAG MRGLITAIDR FEPKRKFRLS TYGLFWIRHA IIRSMTTSNF TRVPFGLESV 240
241 RVEIYKAKTE LWFEMGRPPT EDEVVERLKI TPERYREVLR AAKPVLSLNS KHSVTQEEFI 300
301 NGITDVDGVG ANNSRQPALL RLALDDVLDS LKPKESLVIR QRYGLDGKGD RTLGEIAGNL 360
361 NISREMVRKH EVKALMKLKH QARVDYLRQY IV
|
| Detection Method: | |
| Confidence: | 59.221849 |
| Match: | 1l9zH |
| Description: | DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |
Matching Structure (courtesy of the PDB): |
|
