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View Structure Prediction Details

Protein: RGP5_ARATH
Organism: Arabidopsis thaliana
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGP5_ARATH.

Description E-value Query
Range
Subject
Range
gi|77416931 - gi|77416931|gb|ABA81861.1| UDP-glucose:protein transglucosylase-like [Solanum tuberosum]
561.0 [0..8] [347..13]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV  60
   61 YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID DD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVPAKDPKGF LVDAVTQHVI NLENPATPLF FNTLYDPYCE GADFVRGYPF SLRSGVPCAA  60
   61 SCGLWLNLAD LDAPTQALKT EKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [186-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTAYVDAVMT VPAKAMLPIS GINIAFNREL VGPALVPALR LAGEGKVRWE TLEDVWCGMC  60
   61 LKHISDHLGY GVKTGLPYVW RNERGDAVES LRKKWEGMKL MEKSVPFFDS LKLPETALKV 120
  121 EDCVIELAKA VKEQLGSDDP AFTQAADAMV KWVQLWNSVN SSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle