YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RGP5_ARATH
Organism: Arabidopsis thaliana
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGP5_ARATH.

Description E-value Query
Range
Subject
Range
gi|77416931 - gi|77416931|gb|ABA81861.1| UDP-glucose:protein transglucosylase-like [Solanum tuberosum]
561.0 [0..8] [347..13]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV  60
   61 YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID DD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVPAKDPKGF LVDAVTQHVI NLENPATPLF FNTLYDPYCE GADFVRGYPF SLRSGVPCAA  60
   61 SCGLWLNLAD LDAPTQALKT EKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [186-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTAYVDAVMT VPAKAMLPIS GINIAFNREL VGPALVPALR LAGEGKVRWE TLEDVWCGMC  60
   61 LKHISDHLGY GVKTGLPYVW RNERGDAVES LRKKWEGMKL MEKSVPFFDS LKLPETALKV 120
  121 EDCVIELAKA VKEQLGSDDP AFTQAADAMV KWVQLWNSVN SSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle