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View Structure Prediction Details

Protein: H2A8_ARATH
Organism: Arabidopsis thaliana
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2A8_ARATH.

Description E-value Query
Range
Subject
Range
gi|68432331 - gi|68432331|ref|XP_690287.1| PREDICTED: similar to ReO_6 [Danio rerio]
179.0 [0..8] [117..290]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCNTNILKD VSTKISAFEN VRMIMVEGEM FQVARIHKQL KNRVSAHSSV GATDVVYMTS  60
   61 ILEYLTTEVL QLAENTSKDL KVKRITPRHL QLAIRGDEEL DTLIKGTIIG GSVIPHIH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.522879
Match: 1f66C
Description: Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle