YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18422289, gi\|...
Organism:	Arabidopsis thaliana
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18422289, gi|....

Description	E-value	Query Range	Subject Range
gi\|18141283 - gi\|18141283\|gb\|AAL60579.1\|AF454957_1 senescence-associated cysteine protease [Brassica oleracea]	495.0	[0..1]	[463..1]
RD21A_ARATH - Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1	491.0	[0..1]	[463..1]
gi\|62526575 - gi\|62526575\|gb\|AAX84673.1\| cysteine protease CP1 [Manihot esculenta]	478.0	[0..8]	[458..11]
gi\|87240770 - gi\|87240770\|gb\|ABD32628.1\| Granulin; Peptidase C1A, papain [Medicago truncatula]	475.0	[0..6]	[461..11]
gi\|109390302 - gi\|109390302\|gb\|ABG33750.1\| cysteine protease [Hevea brasiliensis]	474.0	[0..8]	[463..1]
gi\|2511693, gi\|7... - pir\|\|T12041 cysteine proteinase (EC 3.4.22.-) 3 precursor - kidney bean, gi\|2511693\|emb\|CAB17076.1\| ...	472.0	[0..11]	[463..2]
gi\|89274062 - gi\|89274062\|dbj\|BAE80740.1\| cysteine proteinase [Platycodon grandiflorus]	461.0	[0..1]	[463..1]
gi\|13897890 - gi\|13897890\|gb\|AAK48495.1\|AF259983_1 putative cysteine protease [Ipomoea batatas]	460.0	[0..1]	[460..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK  60
   61 KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT RFADLTNEEY RSMYLGAKPT 120
  121 KRVLKTSDRY QA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.17
Match:	1pciA
Description:	Caricain (protease omega)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [133-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVGDALPDSV DWRKEGAVAD VKDQGSCGSC WAFSTIGAVE GINKIVTGDL ISLSEQELVD  60
   61 CDTSYNQGCN GGLMDYAFEF IIKNGGIDTE ADYPYKAADG RCDQNRKNAK VVTIDSYEDV 120
  121 PENSEASLKK ALAHQPISVA IEAGGRAFQL YSSGVFDGLC GTELDHGVVA VGYGTENGKD 180
  181 YWIVRNSWGN RWGESGYIKM ARNIEAPTGK CGIAMEASYP IKKGQNPPNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	1s4vA
Description:	The 2.0 A crystal structure of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [363-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSPPSPIKP PTTCDKYFSC PESNTCCCLY KYGKYCFGWG CCPLEAATCC DDNSSCCPHE  60
   61 YPVCDVNRGT CLMSKNSPFS VKALKRTPAI PFWAKSRKHI A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits