YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3096945, gi\|7...
Organism:	Arabidopsis thaliana
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3096945, gi|7....

Description	E-value	Query Range	Subject Range
gi\|23198300, gi\|... - gi\|23198300\|gb\|AAN15677.1\| Putative auxin-regulated protein [Arabidopsis thaliana], gi\|17745689\|gb\|A...	180.0	[0..1]	[107..1]
gi\|217075552, gi... - gi\|92870685\|gb\|ABE79956.1\| Auxin responsive SAUR protein [Medicago truncatula], gi\|217075552\|gb\|ACJ8...	156.0	[0..1]	[107..1]
gi\|20149050 - gi\|20149050\|gb\|AAM12780.1\| auxin-induced SAUR-like protein [Capsicum annuum]	154.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIMKKTSKL TQTAMLKQIL KRCSSLGKKN GGGYDEDCLP LDVPKGHFPV YVGENRSRYI  60
   61 VPISFLTHPE FQSLLQRAEE EFGFDHDMGL TIPCDELVFQ TLTSMIR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.958607
Match:	PF02519.5
Description:	No description for PF02519.5 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits