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View Structure Prediction Details

Protein: gi|9758827, gi|1...
Organism: Arabidopsis thaliana
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9758827, gi|1....

Description E-value Query
Range
Subject
Range
gi|124530383, gi... - gi|124530383|ref|ZP_01701069.1| chaperone protein DnaJ [Escherichia coli B], gi|124499274|gb|EAY4676...
gi|110640228, gi... - gi|110640228|ref|YP_667956.1| chaperone protein DnaJ [Escherichia coli 536], gi|110341820|gb|ABG6805...
204.0 [0..60] [263..2]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYATSSILSP TPQSFFLSHH LPPISFLYRI NFLGFPVTSC CYGGDIGLAS LYKRRSSIQR  60
   61 RRNRIFVTRA RSSPYEILGV SPSATPQDIK RAYRKLALKY HPDVNKEANA QEKFLKIKHA 120
  121 YTTLINSDSR RKYGSDSRAT GSSTGQTSRK GNSQVEEDFY GLGDFFKDLQ EEYKNWEASA 180
  181 SS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [183-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGKPKSLWEE LSEIGEEFVE FLEKELNISD EDNEGSSKNG ERFDFEEGST EKSSGKNNSS  60
   61 TKNSIEDNID EIEATLAQLK KDLGLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle