| Protein: | PNSL3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 220 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSL3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
270.0 | [0..1] | [220..1] |
|
|
233.0 | [0..5] | [220..21] |
|
|
204.0 | [0..10] | [219..1] |
|
|
203.0 | [0..5] | [219..18] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MAHFIDLNSL TNTLPSLPKL PESRKTGKSS GFACRRTEEF QEPDSVQITR RMTLGFAVSI 60
61 GLTGILGENN VSLAQDNGFW IDGPLPIPPI YNNIV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.550 | a.29.13 | Description not found. |
| View | Download | 0.530 | a.29.10 | Description not found. |
| View | Download | 0.468 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.422 | a.21.1 | HMG-box |
| View | Download | 0.422 | a.21.1 | HMG-box |
| View | Download | 0.421 | d.263.1 | Description not found. |
| View | Download | 0.421 | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.412 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.343 | a.23.5 | Hemolysin expression modulating protein HHA |
|
Region A: Residues: [96-220] |
1 11 21 31 41 51
| | | | | |
1 NEKTGTRTFI KKGVYVADIG TKGRMYRVKK NAFDLLAMED LIGPDTLNYV KKYLRLKSTF 60
61 LFYDFDNLIS AAASEDKQPL TDLANRLFDN FEKLEDAAKT KNLAETESCY KDTKFLLQEV 120
121 MTRMA
|
| Detection Method: | |
| Confidence: | 42.69897 |
| Match: | 1nzeA |
| Description: | Crystal structure of PsbQ polypeptide of photosystem II from higher plants |
Matching Structure (courtesy of the PDB): |
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