YRC Public Data Repository - Protein Structure Prediction

Protein:	GACP3_ARATH
Organism:	Arabidopsis thaliana
Length:	838 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GACP3_ARATH.

Description	E-value	Query Range	Subject Range
TUBGCP3 - tubulin, gamma complex associated protein 3 gi\|168270898 - gi\|168270898\|dbj\|BAG10242.1\| gamma-tubulin complex component 3 [synthetic construct]	693.0	[0..1]	[837..1]
gi\|34879453, gi\|... - gi\|34879453\|ref\|XP_225013.2\| PREDICTED: similar to tubulin, gamma complex associated protein 3 [Ratt...	693.0	[0..1]	[837..1]
GCP3_MOUSE - Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=1 SV=2	690.0	[0..1]	[837..1]
gi\|73989546 - gi\|73989546\|ref\|XP_534189.2\| PREDICTED: similar to Gamma-tubulin complex component 3 (GCP-3) (Spindl...	685.0	[0..1]	[837..1]
GCP3_XENLA - Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1	679.0	[0..1]	[837..1]
gi\|50730530 - gi\|50730530\|ref\|XP_416949.1\| PREDICTED: similar to Gamma-tubulin complex component 3 (GCP-3) (Spindl...	673.0	[0..9]	[837..144]
gi\|114650717, gi... - gi\|114650717\|ref\|XP_001142636.1\| PREDICTED: spindle pole body protein isoform 4 [Pan troglodytes], g...	667.0	[0..28]	[837..2]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA  60
   61 TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN NKWALVYLLK IVSDDR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSAINGLDSS VLLPNLGIGD TGNGVLSRGE AKKKDWSNGV LLVSKDPENL RDIAFREYAI  60
   61 LVKEENEVTE EVLVRDVLYA SQGIDGKYVK FNSEIDGYAV QESVKVPRAT RIMVRMLSEL 120
  121 GWLFRKVKTF ITESMDRFPA EDVGTVGQAF CAALQDELSD YYKLLAVLEA QAMNPIPLVS 180
  181 ESASSNNYLS LRRLSVWFAE PMVKMRLMAV LVDKC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [332-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVLRGGAMAG AIHLHAQHGD PLVHDFMMSL LRCVCSPLFE MVRSWVLEGE LEDTFGEFFV  60
   61 VGQPVKVDLL WREGYKLHPA MLPSFISPSL AQRILRTGKS INFLRVCCDD HGWADAASEA 120
  121 AAASG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [457-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTRRGGLGY GETDALEHLV TEAAKRIDKH LLDVLYKRYK FKEHCLAIKR YLLLGQGDFV  60
   61 QYLMDIVGPK L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [528-688]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPANNISSF ELAGFLEAAI RASNAQYDDR DMLDRLRVKM MPHGSGDRGW DVFSLEYEAR  60
   61 VPLDTVFTES VLSKYLRVFN FLWKLKRVEH ALIGIWKTMK PNCITSNSFV KLQSSVKLQL 120
  121 LSALRRCQVL WNEMNHFVTN FQYYIMFEVL EVSWSNFSKE M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [689-838]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAAKDLDDLL AAHEKYLNAI VGKSLLGEQS QTIRESLFVL FELILRFRSH ADRLYEGIHE  60
   61 LQIRSKESGR EKNKSQEPGS WISEGRKGLT QRAGEFLQSM SQDMDSIAKE YTSSLDGFLS 120
  121 LLPLQQSVDL KFLFFRLDFT EFYSRLHSKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits