| Protein: | gi|110738487, gi... |
| Organism: | Arabidopsis thaliana |
| Length: | 748 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110738487, gi....
| Description | E-value | Query Range |
Subject Range |
|
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222.0 | [0..1] | [748..1] |
|
|
152.0 | [0..2] | [258..3] |
|
|
149.0 | [0..2] | [258..3] |
|
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149.0 | [0..2] | [257..3] |
|
|
148.0 | [0..2] | [258..3] |
|
|
142.0 | [0..254] | [746..32] |
|
|
140.0 | [0..2] | [255..3] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MEEKSSGGGV RLHVGGLGES VGRDDLLKIF SPMGTVDAVE FVRTKGRSFA YIDFSPSSTN 60
61 SLTKLFSTYN GCVWKGGRLR LEKAKEHYLA RLKREWEAAS STSDNTIKAP SDSPPATHLN 120
121 IFFPRLRKVK PMPLSGTGKH KYSFQRVPVS SSLPRSFCDC EEHSNSSLT
|
| Detection Method: |  |
| Confidence: | 28.09691 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [170-236] |
1 11 21 31 41 51
| | | | | |
1 PREIHLHDLE AVNVGRQEAE VNVMNSVMNK LFEKNNVDPE EDNEIEADQD NLIINVASSG 60
61 NDMDSAL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.653 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.653 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.563 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.530 | a.64.1 | Saposin |
| View | Download | 0.501 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.482 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.474 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.471 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.467 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.441 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.436 | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.286 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.274 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.274 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
|
Region A: Residues: [237-369] |
1 11 21 31 41 51
| | | | | |
1 DMLSRKRKSI LNKKTPSEEG YSEGRKGNLT HPSKNRQTIS LEETGRQESS QAIRGKKKPS 60
61 EVVPDKSSDE PSRTKDLEQS IDNISWSQKS SWKSLMANGN SNDFSVSSFL PGVGSSKAVQ 120
121 PAPRNTDLAG LPS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [370-572] |
1 11 21 31 41 51
| | | | | |
1 RENLKKKTKR KRVTSTIMAE DLPVSDDIKR DDSDTMADDI ERDDSDAVEY YTACESMADD 60
61 TASDSVAERD DSDAVEDDTA IDSMADDPAS DSVAESDDGD AVENDTAIDS MADDTVSNSM 120
121 AESDDGDNVE DDTAIDSMCD DTANDDVGSD DSGSLADTVS DTSVEAVPLE FVANTEGDSV 180
181 DGKSNVEKHE NVAEDLNAEK ESL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [573-748] |
1 11 21 31 41 51
| | | | | |
1 VVKENVVDEE EAGKGPLKAS NKSTGGSSWL QKASWTQLVS DKNTSSFSIT QLFPDLTSDK 60
61 GEAAGVINNV GNQFSNSNQT ASAMKQTDYA SSSGGFVAAG VPVDSTPVRS LDENRQRLNG 120
121 KNVSEGAKLG AKKKIIKRKV GSGDTCTFMR SSTSLKEWAK AKKALSEPRR KKNSEE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
