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View Structure Prediction Details

Protein: ORC1B_ARATH
Organism: Arabidopsis thaliana
Length: 813 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ORC1B_ARATH.

Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTPRAKTF KSPTKTPSNI YRKSYLSPSS TSHTPQTPET HTPLRRSARH VSRKIDLGND  60
   61 PIDAPGNDPI EGMNLIRKRE RAPRKPTTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVPSKSKKTE TPKKKKKIDS FTPVSPIRSE TIKKTKKKKR VYYNKVEFDE TEFEIGDDVY  60
   61 VKRREDSNSD EEEDPEIEDC QICFKSDTNI MIECDDCLGG FHLKCLKPPL KEVPEGDWIC 120
  121 QFCEVKKSGQ SQTLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2ysmA
Description: No description for 2ysmA was found.

Predicted Domain #3
Region A:
Residues: [225-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKPPEGKKL ARTMREKLLS GDLWAARIDK LWKEVDDGVY WIRARWYMIP EETVSGRQPH  60
   61 NLKRELYLTN DFADIEMECI LRHCSVKCPK EFSKASNDGD DVFLCEYEYD VHWRSFKRLA 120
  121 ELADGDSDSD QEWNGRKEEE VDDSDEEMEL DDEVLKSKRG GLTSARGGAN SRKGRFFGVE 180
  181 KVGMKLIPEH VRCHKQSELE KAKATLLLAT RPKSLPCRSK EMEEITSFIK GSISDDQCLG 240
  241 RCMYIHGVPG TGKTISVLSV MKNLKAEVEE GSVSPYCFVE INGLKLASPE NIYSVIYEAL 300
  301 SGHRVGWKKA LQCLNERFAE GKRIGKEDEK PCILLIDELD LLVTRNQSVL YNILDWPTKP 360
  361 NSKLVVLGIA NTMDLPEKLL PRISSRMGIQ RLCFGPYNHT QLQEIISTRL NGIDAFEKTA 420
  421 IEFASRKVAA ISGDARRALE ICRRAAEVAD HRLNTNKSAK NQLVIMADVE AAIQEMFQAP 480
  481 HIQVMK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1r7rA
Description: The crystal structure of murine p97/VCP at 3.6A
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [711-813]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSKLSKIFL TAMVHELYKT GMAETTFDRV ATTVSSICLT NGEAFPGWDI LLKIGCDLGE  60
   61 CRIILCEPGE KHRLQKLQLN FPSDDVAFAL KDNKDLPWLA NYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.522879
Match: 2ce7A
Description: EDTA treated
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle