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View Structure Prediction Details

Protein: UXS4_ARATH
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UXS4_ARATH.

Description E-value Query
Range
Subject
Range
gi|13605583, gi|... - gi|928932|emb|CAA89205.1| homolog of dTDP-glucose 4-6-dehydratases [Arabidopsis thaliana], pir||S582...
404.0 [0..1] [433..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASELTNRRH EIEQPEAESY YPKPIKPWFV AIRPIRYMLR EQRLVFVLVG IAIATLGFTI  60
   61 FSKSSNHQPI PYDVDPLSGY GMRSESSYLP ATIHKKPSIE YMSRIGSAGG KIPLGLKRKV 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2z5lA
Description: No description for 2z5lA was found.

Predicted Domain #2
Region A:
Residues: [121-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRVVVTGGAG FVGSHLVDRL MARGDNVIVV DNFFTGRKEN VMHHFNNPNF EMIRHDVVEP  60
   61 ILLEVDQIYH LACPASPVHY KFNPVKTIKT NVVGTLNMLG LAKRVGARFL LTSTSEVYGD 120
  121 PLQHPQVETY WGNVNPIGVR SCYDEGKRTA ETLTMDYHRG ANVEVRIARI FNTYGPRMCI 180
  181 DDGRVVSNFV AQALRKEPLT VYGDGKQTRS FQFVSDLVEG LMRLMEGEHV GPFNLGNPGE 240
  241 FTMLELAKVV QETIDPNAKI EFRPNTEDDP HKRKPDITKA KELLGWEPKV ALRQGLPLMV 300
  301 KDFRQRVFGD QKQDSSTTSS STE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 2b69A
Description: Crystal Structure of Human UDP-glucoronic acid decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
UDP-glucose 4-epimerase activity 2.13934644118967 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.03956654822048 bayes_pls_golite062009
nucleic acid binding 0.868888700854563 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.82673050487418 bayes_pls_golite062009
DNA binding 0.790382977752475 bayes_pls_golite062009
binding 0.784517759335365 bayes_pls_golite062009
transcription regulator activity 0.613310508772122 bayes_pls_golite062009
transcription factor activity 0.11102650759187 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle