YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AAH_ARATH
Organism: Arabidopsis thaliana
Length: 525 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAH_ARATH.

Description E-value Query
Range
Subject
Range
gi|11350628 - pir||C83591 N-carbamoyl-beta-alanine amidohydrolase PA0444 [imported] - Pseudomonas aeruginosa (stra...
gi|116054174, gi... - gi|53727148|ref|ZP_00140894.2| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...
gi|107099429 - gi|107099429|ref|ZP_01363347.1| hypothetical protein PaerPA_01000441 [Pseudomonas aeruginosa PACS2]
gi|9946302, gi|1... - gi|9946302|gb|AAG03833.1|AE004481_9 N-carbamoyl-beta-alanine amidohydrolase [Pseudomonas aeruginosa ...
gi|194554527, gi... - gi|84324323|ref|ZP_00972382.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...
282.0 [0..77] [523..1]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPHPSSSS SRSHPFLSHV YHTSFHHHHH HNHPSLVLFW CLVFSLLSPL ALSSSSSSSS  60
   61 SSSDSSSSSS SHISLGIGET EGTKHDLHQA I

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.99
Match: 1tt4A
Description: Structure of NP459575, a predicted glutathione synthase from Salmonella typhimurium
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [92-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRDEAVARLH ELGQVSDAAT HLERTFMSPA SIRAIPLIRG WMEDAGLSTW VDYMGNVHGR  60
   61 VEPKNGSSQA LLIGSHMDTV IDAGKYDGSL GIISAISALK VLKIDGRLGE LKRPVEVIAF 120
  121 SDEEGVRFQS TFLGSAALAG IMPVSRLEVT DKSGISVQDA LKENSIDITD ENLMQLKYDP 180
  181 ASVWGYVEVH IEQGPVLEWV GYPLGVVKGI AGQTRLKVTV KGSQGHAGTV PMSMRQDPMT 240
  241 GAAELIVLLE SVCKNPKDYL SCNVQCNEDT VESLANSLVC TVGEISTWPS ASNVIPGQVT 300
  301 FTVDLRTIDD VGRKAILHDL STRMYQICDK RSLLCSIERK HDADAVMSDP QLSLQLKSAA 360
  361 QSALKKMTGE VQDEVPVLMS GAGHDAMAMA HLTKVGMLFV RCRGGISHSP AEHVLDDDVG 420
  421 AAGLAILEFL ESQM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 1z2lA
Description: Crystal structure of Allantoate-amidohydrolase from E.coli K12 in complex with substrate Allantoate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.0609849976664 bayes_pls_golite062009
peptidase activity 3.04706302825019 bayes_pls_golite062009
catalytic activity 2.3710874246093 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.30644893326426 bayes_pls_golite062009
exopeptidase activity 1.25673143627992 bayes_pls_golite062009
succinyl-diaminopimelate desuccinylase activity 0.851637991746991 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.818684394421989 bayes_pls_golite062009
carboxypeptidase activity 0.76593160329727 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle