YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|20465921, gi|...
Organism: Arabidopsis thaliana
Length: 551 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465921, gi|....

Description E-value Query
Range
Subject
Range
gi|6179398, gi|2... - gi|6179398|emb|CAB59910.1| BNH protein [Arabidopsis thaliana], gi|29028932|gb|AAO64845.1| At1g55560 ...
413.0 [0..2] [550..1]

Back

Predicted Domain #1
Region A:
Residues: [1-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGGRLLTVL VCLASTVALV SAGDPYFYYT WNVTYGTAAP LGIPQQVILI NGQFPGPNLN  60
   61 STSNNNVVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVTGT SCPIPAGTNF TYHFQPKDQI 120
  121 GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYAK SHTALKNFLD 180
  181 SGRTLGSPDG VLINGKSGKL GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL 240
  241 VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG 300
  301 SNVQASSDIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK 360
  361 NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV IKDEPAAKIT TLTVEPNVLN 420
  421 ITFRTFVEVV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRNNYNLLD AVSRHTVQVY 480
  481 PKSWSAILLT FDNAGMWNIR SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV 540
  541 KGLPLPTPYT I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1aozA
Description: Ascorbate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 3.01218347550477 bayes_pls_golite062009
ion transmembrane transporter activity 2.94535655802043 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.6745480751389 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.65536020269373 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.17429358667283 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.63942316748862 bayes_pls_golite062009
iron ion transmembrane transporter activity 1.51790376716885 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.46068051535503 bayes_pls_golite062009
transporter activity 1.20799429432885 bayes_pls_golite062009
metal ion transmembrane transporter activity 1.14867039407339 bayes_pls_golite062009
transmembrane transporter activity 1.09624639459552 bayes_pls_golite062009
substrate-specific transporter activity 0.85648428256869 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 0.761084719356529 bayes_pls_golite062009
copper ion binding 0.73440414441333 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor 0.575651787344859 bayes_pls_golite062009
ferroxidase activity 0.575651787344859 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions 0.17115124627182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle