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View Structure Prediction Details

Protein: AOC1_ARATH
Organism: Arabidopsis thaliana
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AOC1_ARATH.

Description E-value Query
Range
Subject
Range
AOC2_ARATH - Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1
428.0 [0..1] [254..1]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTISLQS ISMTTLNNLS YSKQFHRSSL LGFSKSFQNF GISSNGPGSS SPTSFTPKKK  60
   61 LTPTRALSQN LGNTENPRPS KVQELSVYEI NDLDRHSPKI LKNAFSFRFG LGDLVPFTNK 120
  121 LYTGDLKKRV GITAGLCVVI EHVPEKNGDR FEATYSFYFG DYGHLSVQGP YLTYEDSFLA 180
  181 ITGGAGIFEG AYGQVKLQQL VYPTKLFYTF YLKGLANDLP LELIGTPVPP SKDVEPAPEA 240
  241 KALKPSGVVS NFTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.522879
Match: 1zvcA
Description: X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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