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View Structure Prediction Details

Protein: gi|15241036, gi|...
Organism: Arabidopsis thaliana
Length: 732 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241036, gi|....

Description E-value Query
Range
Subject
Range
CHX15_ARATH - Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
494.0 [0..14] [732..12]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENITKTFQY GGVDWLCEPW VGAGSLGIGR GENPLKFALP LLLLQISVFS IFSVSFQFLL  60
   61 RPFGKFAFLT QMLAGICLGP SVIGRNKQYM ATFFYARSVY IIESFEAICF LFICYITTCQ 120
  121 VDTRMIKRVG KLAFINGILL FLIPFVWGQF AAILISKRLK SGPAGIPPVE FHHVAIVQST 180
  181 MFFQVVYGVL SSLKMLNTEP GRLALASMMV HDCLSWCFFM LNIAIKLNVD LP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNRAAFLSV LQTEMNADDN DIGDSICVPT TNAVDEESNT RRTLSQGLLS LCYMRLALHL  60
   61 LPLGRICGFT LLLWCGRLRS S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [314-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPKTSASRHG TVRQNRFAKM IAIALPSLYY KVPLWHAILV GFIVNIQGLY DVQIYKQNFN  60
   61 YTKISSKSFG AMVMSATVNS TIFIVIVKKL YQTMSKRNPY KRRTVQHCRV EA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRILTCFRN REAVRPVLDL VELSRPAIGS PLSVFAVNLE ELNNHSLPLL IHHTQEISPF  60
   61 LVPSRRDQIV KAFHNFEKTN QETVLIECFT AVAPRKTMHE DVCAIAFDQE TDIVILTLDA 120
  121 GIELWERLLC RNLLHNCPCS VALFIDRGRL PDFRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [581-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLKKLTINI GAIFLGGPDD REMLAYATRL ASHPSVELQV FRLVDQNGVS PLRDMVERNH  60
   61 DMRVINVFRK ENSEKNIIFR EVRIEEAVNL LDLLRKEGDD FDLMMVGIRH EENLLMLEGL 120
  121 SEWSDMKELG EVGDVLISKD LELSVSVLAV QQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 2pfsA
Description: No description for 2pfsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle