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View Structure Prediction Details

Protein: gi|15241036, gi|...
Organism: Arabidopsis thaliana
Length: 732 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241036, gi|....

Description E-value Query
Range
Subject
Range
CHX15_ARATH - Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
494.0 [0..14] [732..12]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENITKTFQY GGVDWLCEPW VGAGSLGIGR GENPLKFALP LLLLQISVFS IFSVSFQFLL  60
   61 RPFGKFAFLT QMLAGICLGP SVIGRNKQYM ATFFYARSVY IIESFEAICF LFICYITTCQ 120
  121 VDTRMIKRVG KLAFINGILL FLIPFVWGQF AAILISKRLK SGPAGIPPVE FHHVAIVQST 180
  181 MFFQVVYGVL SSLKMLNTEP GRLALASMMV HDCLSWCFFM LNIAIKLNVD LP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNRAAFLSV LQTEMNADDN DIGDSICVPT TNAVDEESNT RRTLSQGLLS LCYMRLALHL  60
   61 LPLGRICGFT LLLWCGRLRS S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [314-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPKTSASRHG TVRQNRFAKM IAIALPSLYY KVPLWHAILV GFIVNIQGLY DVQIYKQNFN  60
   61 YTKISSKSFG AMVMSATVNS TIFIVIVKKL YQTMSKRNPY KRRTVQHCRV EA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRILTCFRN REAVRPVLDL VELSRPAIGS PLSVFAVNLE ELNNHSLPLL IHHTQEISPF  60
   61 LVPSRRDQIV KAFHNFEKTN QETVLIECFT AVAPRKTMHE DVCAIAFDQE TDIVILTLDA 120
  121 GIELWERLLC RNLLHNCPCS VALFIDRGRL PDFRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [581-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLKKLTINI GAIFLGGPDD REMLAYATRL ASHPSVELQV FRLVDQNGVS PLRDMVERNH  60
   61 DMRVINVFRK ENSEKNIIFR EVRIEEAVNL LDLLRKEGDD FDLMMVGIRH EENLLMLEGL 120
  121 SEWSDMKELG EVGDVLISKD LELSVSVLAV QQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 2pfsA
Description: No description for 2pfsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle