| Protein: | CDF3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 448 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDF3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
427.0 | [0..1] | [448..1] |
|
|
306.0 | [0..2] | [446..1] |
|
|
287.0 | [0..7] | [446..14] |
|
|
281.0 | [0..72] | [447..2] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC 60
61 NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG KTLKKPTKIL PCPRCKSMET 120
121 KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSS
|
| Detection Method: |  |
| Confidence: | 1.17 |
| Match: | 1jocA |
| Description: | Eea1; Eea1 homodimerisation domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [166-358] |
1 11 21 31 41 51
| | | | | |
1 SSHYRHITIS EALEAARLDP GLQANTRVLS FGLEAQQQHV AAPMTPVMKL QEDQKVSNGA 60
61 RNRFHGLADQ RLVARVENGD DCSSGSSVTT SNNHSVDESR AQSGSVVEAQ MNNNNNNNMN 120
121 GYACIPGVPW PYTWNPAMPP PGFYPPPGYP MPFYPYWTIP MLPPHQSSSP ISQKCSNTNS 180
181 PTLGKHPRDE GSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [359-448] |
1 11 21 31 41 51
| | | | | |
1 KKDNETERKQ KAGCVLVPKT LRIDDPNEAA KSSIWTTLGI KNEAMCKAGG MFKGFDHKTK 60
61 MYNNDKAENS PVLSANPAAL SRSHNFHEQI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.498 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.498 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.378 | d.15.1 | Ubiquitin-like |
| View | Download | 0.378 | d.15.1 | Ubiquitin-like |
| View | Download | 0.373 | d.15.1 | Ubiquitin-like |
| View | Download | 0.372 | a.77.1 | DEATH domain |
| View | Download | 0.368 | a.4.1 | Homeodomain-like |
| View | Download | 0.362 | a.39.1 | EF-hand |
| View | Download | 0.353 | d.26.1 | FKBP-like |
| View | Download | 0.342 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
