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View Structure Prediction Details

Protein: P4H3_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P4H3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537370 - gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
367.0 [0..1] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLRHSRFQ ARKWSTLMLV LFMLFMLTIV LLMLLAFGVF SLPINNDESS PIDLSYFRRA  60
   61 ATERSEGLGK RGDQWTEVLS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.811 N/A N/A d.52.3 Prokaryotic type KH domain (KH-domain type II)

Predicted Domain #2
Region A:
Residues: [81-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WEPRAFVYHN FLSKEECEYL ISLAKPHMVK STVVDSETGK SKDSRVRTSS GTFLRRGRDK  60
   61 IIKTIEKRIA DYTFIPADHG EGLQVLHYEA GQKYEPHYDY FVDEFNTKNG GQRMATMLMY 120
  121 LSDVEEGGET VFPAANMNFS SVPWYNELSE CGKKGLSVKP RMGDALLFWS MRPDATLDPT 180
  181 SLHGGCPVIR GNKWSSTKWM HVGEYKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle