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View Structure Prediction Details

Protein: P4H3_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P4H3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537370 - gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
367.0 [0..1] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLRHSRFQ ARKWSTLMLV LFMLFMLTIV LLMLLAFGVF SLPINNDESS PIDLSYFRRA  60
   61 ATERSEGLGK RGDQWTEVLS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.811 N/A N/A d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.688 N/A N/A d.58.10 Acylphosphatase-like
View Download 0.679 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.657 N/A N/A d.79.3 L30e-like
View Download 0.651 N/A N/A d.109.1 Actin depolymerizing proteins

Predicted Domain #2
Region A:
Residues: [81-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WEPRAFVYHN FLSKEECEYL ISLAKPHMVK STVVDSETGK SKDSRVRTSS GTFLRRGRDK  60
   61 IIKTIEKRIA DYTFIPADHG EGLQVLHYEA GQKYEPHYDY FVDEFNTKNG GQRMATMLMY 120
  121 LSDVEEGGET VFPAANMNFS SVPWYNELSE CGKKGLSVKP RMGDALLFWS MRPDATLDPT 180
  181 SLHGGCPVIR GNKWSSTKWM HVGEYKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle