YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15241697, gi\|...
Organism:	Arabidopsis thaliana
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241697, gi|....

Description	E-value	Query Range	Subject Range
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	144.0	[0..2]	[138..32]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAKDSSEPV TTLTQFNNID VVITDYHMPG LNGVQLKKRI DEEFGNLPVI DLYRNIEHEE  60
   61 LFRRALCFMH KPISRRDLNS LNVVCQQALR HRMNGETNLN GSGQNVTDDP DDWLRLREKP 120
  121 KLKWTKPLQH RFMSALKSLG VASKY

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Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1kgsA
Description:	PhoB; PhoB receiver domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
signal transducer activity	2.07885074402355	bayes_pls_golite062009
molecular transducer activity	2.07885074402355	bayes_pls_golite062009
transcription regulator activity	1.72455852503325	bayes_pls_golite062009
two-component response regulator activity	1.53373140048441	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: