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View Structure Prediction Details

Protein: gi|15238897, gi|...
Organism: Arabidopsis thaliana
Length: 575 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15238897, gi|....

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
659.0 [0..48] [575..10]

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Predicted Domain #1
Region A:
Residues: [1-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAITKNGSL SQTLVHCGPK SLSSFIPVRC LRFSKNPFPK KLVVTRARTS INSDHEAANR  60
   61 PLFQFPPSLL DDRFLSISAN QSEIDSLGRD IEALKAKVSE KLVCMDVKER IHLIHLLVSL 120
  121 GVAYHFEKQI EEFLKVDFEN VEDMNLGEED MYSISVIFRV FRLYRHKLSS DVFNRFKEEN 180
  181 GDFKKCLLDD KKSLTKQWAS RGNTWNYFVG GSNEEHLSGH IKNVLYLSQQ ENAEVVMSRE 240
  241 YIQFYEQETH HDETLLKFAK INFKFMQLHY VQELQTIVKW WKELDLESKI PNYYRVRAVE 300
  301 CLYWAMAVYM EPQYSVARII LSKSLVLWTI IDDLYDAYCT LPEAIAFTEN MERWETDAID 360
  361 MPDHMKVLLR SLIDLMEDFK GEVRSEGRLY SVEYGIDEWK RLFRADLTIS KWARTGYIPN 420
  421 YDEYMEVGIV TGGVDVTVAF AFIGMGEAGK EAFDWIRSRP KFIQTIDLKS RLRDDVATYK 480
  481 DEMARGEIAT GINCYMKQYK VTEEEAFLEF HRRIKHTSKL VNEEYFKTTV PLKLVRIAFN 540
  541 VGRVIDTNYK HGDGLTYTGI VGGQITSLFL DLITI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 178.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle