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View Structure Prediction Details

Protein: NAC12_ARATH
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC12_ARATH.

Description E-value Query
Range
Subject
Range
NAC43_ARATH - NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2
324.0 [0..1] [356..1]
gi|125549156 - gi|125549156|gb|EAY94978.1| hypothetical protein OsI_16785 [Oryza sativa Indica Group]
gi|125591113, gi... - gi|50926750|ref|XP_473322.1| OSJNBb0020O11.1 [Oryza sativa (japonica cultivar-group)], gi|38605889|e...
304.0 [0..10] [348..46]
gi|116310094 - gi|116310094|emb|CAH67114.1| H0502G05.5 [Oryza sativa (indica cultivar-group)]
298.0 [0..10] [348..1]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE VDLNKLEPWD  60
   61 IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIC SCVRRIGLRK 120
  121 TLVFYKGRAP HGQKSDWIMH EYRLDDTPMS NGYADVVTED PMSYNEEGWV VCRVFRKKNY 180
  181 QKIDDCPKIT LSSLPDDTEE EKGPTFHNTQ NVTGLDHVLL YMDRTGSNIC MPESQTTTQH 240
  241 QDDVLFMQLP SLETPKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [258-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESPVDQSFLT PSKLDFSPVQ EKITERPVCS NWASLDRLVA WQLNNGHHNP CHRKSFDEEE  60
   61 ENGDTMMQRW DLHWNNDDNV DLWSSFTESS SSLDPLLHLS V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle