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View Structure Prediction Details

Protein: gi|15228863, gi|...
Organism: Arabidopsis thaliana
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228863, gi|....

Description E-value Query
Range
Subject
Range
gi|23297568, gi|... - gi|42572905|ref|NP_974549.1| phosphoinositide binding [Arabidopsis thaliana], gi|23297568|gb|AAN1289...
628.0 [0..1] [469..1]
gi|92871212 - gi|92871212|gb|ABE80297.1| Protein of unknown function DUF828, plant [Medicago truncatula]
512.0 [0..6] [472..14]
gi|41469489, gi|... - gi|50917169|ref|XP_468981.1| expressed protein (with alternative splicing) [Oryza sativa (japonica c...
437.0 [0..62] [468..72]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV  60
   61 ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL SQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEVSPRTSGR LSHSSGPLNG SLTDSPPISP HQVDDIKQFC RSNNNFNSQY RSTGTTPGPI  60
   61 TATTTQSKTV GRWLKDRREK KKEEMRAHNA QIHAAVSVAG VAAAVAAIAA ATAASSSAGK 120
  121 DENMAKTDMA VASAATLVAA QCVEAAEVMG AERDHLASVV SSAVNVRSAG DIMTLTAGAA 180
  181 TAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGVATLKARA MKEVWHIASV IPMDKGINLG GCSNVNGNGS YVSSSSSHSG EFLVEDNFLG  60
   61 HCNREWL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [354-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARGGQLLKRT RKGDLHWKIV SVYINRLNQV ILKMKSRHVG GTFTKKNKNV VIDVIKNVQA  60
   61 WPGRHLLEGG EDLRYFGLKT VPRGIVEFQC KSQREYEMWT QGVSRLIAVA AERNNRYRI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 68.167491
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle