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View Structure Prediction Details

Protein: XPF_ARATH
Organism: Arabidopsis thaliana
Length: 956 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for XPF_ARATH.

Predicted Domain #1
Region A:
Residues: [1-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKYHQQII SDLLEDSNGG LLILSSGLSL AKLIASLLIL HSPSQGTLLL LLSPAAQSLK  60
   61 SRIIHYISSL DSPTPTEITA DLPANQRYSL YTSGSPFFIT PRILIVDLLT QRIPVSSLAG 120
  121 IFILNAHSIS ETSTEAFIIR IVKSLNSSAY IRAFSDRPQA MVSGFAKTER TMRALFLRKI 180
  181 HLWPRFQLDV SQELEREPPE VVDIRVSMSN YMVGIQKAII EVMDACLKEM KKTNKVDVDD 240
  241 LTVESGLFKS FDEIVRRQLD PIWHTLGKRT KQLVSDLKTL RKLLDYLVRY DAVSFLKFLD 300
  301 TLRVSESYRS VWLFAESSYK IFDFAKKRVY RLVKASDVKS KEHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.045757
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #2
Region A:
Residues: [345-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNKSGKKRNS KGETDSVEAV GGETATNVAT GVVVEEVLEE APKWKVLREI LEETQEERLK  60
   61 QAFSEEDNSD NNGIVLVACK DERSCMQLED CITNNPQKVM REEWEMYLLS KIELRSMQTP 120
  121 QKKKQKTPKG FGILDGVVPV TTIQNSEGSS VGRQEHEALM AAASSIRKLG KTTDMASGNN 180
  181 NPEPHVDKAS CTKGKAKKDP TSLRRSLRSC NKKTTNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [562-706]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPEILPGPEN EEKANEASTS APQEANAVRP SGAKKLPPVH FYALESDQPI LDILKPSVII  60
   61 VYHPDMGFVR ELEVYKAENP LRKLKVYFIF YDESTEVQKF EASIRRENEA FESLIRQKSS 120
  121 MIIPVDQDGL CMGSNSSTEF PASST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [707-956]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNSLTRKAGG RKELEKETQV IVDMREFMSS LPNVLHQKGM KIIPVTLEVG DYILSPSICV  60
   61 ERKSIQDLFQ SFTSGRLFHQ VEMMSRYYRI PVLLIEFSQD KSFSFQSSSD ISDDVTPYNI 120
  121 ISKLSLLVLH FPRLRLLWSR SLHATAEIFT TLKSNQDEPD ETRAIRVGVP SEEGIIENDI 180
  181 RAENYNTSAV EFLRRLPGVS DANYRSIMEK CKSLAELASL PVETLAELMG GHKVAKSLRE 240
  241 FLDAKYPTLL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.30103
Match: 3c65A
Description: No description for 3c65A was found.

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