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View Structure Prediction Details

Protein: NFYA6_ARATH
Organism: Arabidopsis thaliana
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYA6_ARATH.

Description E-value Query
Range
Subject
Range
NFYA3_ARATH - Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2
309.0 [0..1] [300..2]
gi|108708770, gi... - gi|57222442|gb|AAW39026.1| putative CCAAT-binding transcription factor [Oryza sativa (japonica culti...
263.0 [0..25] [286..10]
gi|45861211 - gi|45861211|gb|AAS78482.1| CCAAT-box transcription factor complex WHAP8 [Triticum aestivum]
246.0 [0..32] [266..5]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS  60
   61 TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN PIGSHSISKV SQDSVVLPIE 120
  121 AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSRMPLPHNI PENEPIFVNA KQYQAILRRR ERRAKLEAQN KLIKVRKPYL HESRHLHALK  60
   61 RVRGSGGRFL NTKKHQESNS SLSPPF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.853872
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [244-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIPPHVFKNS PGKFRQMDIS RGGVVSSVST TSCSDITGNN NDMFQQNPQF RFSGYPSNHH  60
   61 VSVLM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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