| Protein: | RTL2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 391 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTL2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
287.0 | [0..1] | [391..1] |
|
Region A: Residues: [1-303] |
1 11 21 31 41 51
| | | | | |
1 MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM 60
61 EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD SAIGLAISNY LYLTYPSLEP 120
121 HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL 180
181 VKAPKVLADL FESLAGAVYV DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC 240
241 HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM 300
301 VID
|
| Detection Method: |  |
| Confidence: | 40.09691 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.103878681691 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.02847548000256 | bayes_pls_golite062009 |
| endonuclease activity | 1.52328576888271 | bayes_pls_golite062009 |
| binding | 1.36306903445995 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33734225890407 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.80785216315429 | bayes_pls_golite062009 |
| catalytic activity | 0.328884095744829 | bayes_pls_golite062009 |
| protein binding | 0.018276859224266 | bayes_pls_golite062009 |
|
Region A: Residues: [304-391] |
1 11 21 31 41 51
| | | | | |
1 EDSVEIQLTH AKTKLNEICL KKKWPKPIYS VEEDRSSVQG KRFVCSAKIK ITEEKTLYMK 60
61 GDEQSKIKKA ESSSAYHMIR ALRKSHYL
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 2cpnA |
| Description: | Solution structure of the second dsRBD of TAR RNA-binding protein 2 |
Matching Structure (courtesy of the PDB): |
|
