YRC Public Data Repository - Protein Structure Prediction

Protein:	LOX6_ARATH
Organism:	Arabidopsis thaliana
Length:	917 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOX6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|16904543 - gi\|16904543\|emb\|CAD10740.1\| lipoxygenase [Corylus avellana]	1148.0	[0..53]	[917..3]
gi\|899344, gi\|21... - gi\|899344\|emb\|CAA58859.1\| lipoxygenase [Nicotiana tabacum], pir\|\|S57964 lipoxygenase (EC 1.13.11.12)...	1142.0	[0..68]	[917..5]
LOX15_SOLTU - Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1	1141.0	[0..74]	[917..13]
LOX3_PEA - Seed linoleate 9S-lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1	1137.0	[0..68]	[917..1]
gi\|10764845 - gi\|10764845\|gb\|AAG21691.1\| lipoxygenase [Lycopersicon esculentum]	1137.0	[0..67]	[917..4]
gi\|1942405, gi\|3... - gi\|58176653\|pdb\|1RRL\|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution, gi\|58176652...	1136.0	[0..74]	[917..4]
gi\|8649004 - gi\|8649004\|emb\|CAB94852.1\| lipoxygenase [Prunus dulcis]	1136.0	[0..67]	[917..7]
gi\|32454708 - gi\|32454708\|gb\|AAP83135.1\| lipoxygenase [Nicotiana attenuata]	1136.0	[0..67]	[917..5]

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Predicted Domain #1

Region A:
Residues: [1-917]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN  60
   61 KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF EHQLELFMKA IGQGMLIQLV 120
  121 SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI 180
  181 CLSEIIIEDS TDTILFPANT WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV 240
  241 RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC 300
  301 ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID 360
  361 NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY DTPAVIKWDR FAWLRDNEFG 420
  421 RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR 480
  481 LFLVDYHDIL LPFVEKINSI KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK 540
  541 FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV 600
  601 YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA 660
  661 DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD LVESYVKHFY SDSKSITSDL 720
  721 ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY 780
  781 VPNRPTLLRK LIPQETDPDY EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY 840
  841 LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP 900
  901 TSPHGVTGRG IPNSISI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1hu9A
Description:	Lipoxigenase, C-terminal domain; Plant lipoxigenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits