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View Structure Prediction Details

Protein: ETFQO_ARATH
Organism: Arabidopsis thaliana
Length: 633 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ETFQO_ARATH.

Description E-value Query
Range		 Subject
Range
gi|110647072, gi... - gi|110833961|ref|YP_692820.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Alcanivorax ...
 408.0 [0..93] [633..1]

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Predicted Domain #1
Region A:
Residues: [1-90] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRFLVKLSS SSSPFSNQLR SLKNQRLILP LLPSSKPFTS SSVSPPPSPL NASNRFGYPY  60
   61 SADLFRNLSP LNPNSRILGV NGITSSRCIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1h7xA
Description: Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [91-633] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEAVRESIEY DVLIVGAGPA GLSAAIRLKQ LSQEKNIDLS VCVVEKGAEV GGHIISGNVF  60
   61 EPLALDELLP HWRQEHAPIE IPASSDKFWF LTKDRAFSLP SPFDNKGNYV ISLSQLVRWL 120
  121 GGKAEELGTE IYPGFSASEV LFDASDKVVG IATKDMGISK DGSKKENFQP GVDIKGRVTL 180
  181 FAEGCRGSLS ERIIKKYKLR EEVNAQHQTY ALGIKEVWEI DESKHNPGEV IHTLGWPLDP 240
  241 KTYGGSFLYH MNDRQVALGL VVALNYHNPF LNPYEEFQKL KHHPAIKGIL EGGTVLQYGA 300
  301 RTLNEGGFQS IPYPVFPGGA IIGCSAGFLN VPKIKGTHTA MKSGMLAAEA AFGALHEGLN 360
  361 MNTYWDNLRD SWVWKELYAA RNYRPAFEYG LLPGLAISAM EHYVLKGKVP FTLKHGKADH 420
  421 EATDLARKWT PIVYPKPDGV LSFDVPTSLY RSNTNHDHDQ PSHLRLRDPK IPEKVNFPEY 480
  481 AAPESRYCPA RVYEYIEDEE GKPKLQINAQ NCLHCKACDI KDPKQNIEWT VPEGGGGPAY 540
  541 SLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 2gmhA
Description: No description for 2gmhA was found.

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 6.5929955386305 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 6.45562261241375 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 6.34963309803617 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 5.69483449389334 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 3.91001933271643 bayes_pls_golite062009
electron carrier activity 3.21957528314564 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.11137503143637 bayes_pls_golite062009
oxidoreductase activity 3.10483430063263 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.04960158864768 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor 3.0400550620086 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.87261684242536 bayes_pls_golite062009
formate dehydrogenase activity 2.79579164562277 bayes_pls_golite062009
electron-transferring-flavoprotein dehydrogenase activity 2.1276770745496 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 1.35744482443829 bayes_pls_golite062009
transporter activity 1.2818063852101 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.08975609376408 bayes_pls_golite062009
transmembrane transporter activity 1.07293152484928 bayes_pls_golite062009
binding 0.850925220183928 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.69501605197281 bayes_pls_golite062009
substrate-specific transporter activity 0.556967966402473 bayes_pls_golite062009
catalytic activity 0.488483980994331 bayes_pls_golite062009
metal cluster binding 0.484911132627709 bayes_pls_golite062009
iron-sulfur cluster binding 0.484911132627709 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.31459693204333 bayes_pls_golite062009
active transmembrane transporter activity 0.301257942260531 bayes_pls_golite062009
nucleic acid binding 0.162130833238942 bayes_pls_golite062009
protein binding 0.122045589752402 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 0.10059033442163 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 0.0827182678048914 bayes_pls_golite062009
primary active transmembrane transporter activity 0.0724852054074128 bayes_pls_golite062009
DNA binding 0.022476246602636 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle