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View Structure Prediction Details

Protein: KAN4_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KAN4_ARATH.

Description E-value Query
Range
Subject
Range
gi|51968898 - gi|51968898|dbj|BAD43141.1| hypothetical protein [Arabidopsis thaliana]
195.0 [0..13] [211..100]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF  60
   61 NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV  60
   61 KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1irzA
Description: Arr10-B
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [197-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSPNSSSVQK TQRASWSSTK EVSRSISTQA YSHLGTTHHT KDNEEKEDTN IHLNLDFTLG  60
   61 RPSWGMEYAE PSSDLTLLKC 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle