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View Structure Prediction Details

Protein: GEM_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GEM_ARATH.

Description E-value Query
Range
Subject
Range
gi|26452129 - gi|26452129|dbj|BAC43153.1| unknown protein [Arabidopsis thaliana]
535.0 [0..1] [299..1]
gi|113547682, gi... - gi|34902414|ref|NP_912553.1| Putative FH protein interacting protein FIP1 [Oryza sativa (japonica cu...
366.0 [0..73] [292..37]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPKGDTVV KTEVPVKDPS LSVVDSKTKG VEDANTEIAL SDEVEIETKG SDSTPVKAPS  60
   61 RTSSGSKKSV HWSPELVSGS QEPDQKAASS SSAGSNPYIA RSPAETSDAS LKDTMETVKG 120
  121 VLGRWGKRVA EAAKKTESLA GNTWQHLRTA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [151-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFADAAMGR IAQSTKVFAE GGYEKIFRQT FETDPEEQLL NSFACYLSTS AGPVMGVLYI  60
   61 SSAKLAYCSD NPLSYKNGDQ TEWSYYKVVI PLHQLKAVNP SASIVNPAEK YIQVISVDNH 120
  121 EFWFMGFLNY DGAVTSLQDS LQAGALRSV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.958607
Match: PF02893.11
Description: No description for PF02893.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle