YRC Public Data Repository - Protein Structure Prediction

Protein:	DRP4C_ARATH
Organism:	Arabidopsis thaliana
Length:	669 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRP4C_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28422236, gi\|... - gi\|28422236\|gb\|AAH44291.1\| MGC53884 protein [Xenopus laevis], gi\|148236079\|ref\|NP_001079557.1\| simil...	502.0	[0..43]	[666..1]
gi\|38107621, gi\|... - gi\|39961271\|ref\|XP_364672.1\| hypothetical protein MGG_09517 [Magnaporthe grisea 70-15], gb\|EAA53767....	496.0	[0..45]	[665..17]
gi\|119331078, gi... - gi\|60098469\|emb\|CAH65065.1\| hypothetical protein [Gallus gallus], gi\|119331078\|ref\|NP_001073190.1\| d...	495.0	[0..43]	[666..1]
DNM1L_DANRE - Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1	493.0	[0..43]	[666..1]
gi\|85099877 - gi\|85099877\|ref\|XP_960862.1\| vacuolar sorting protein 1 [Neurospora crassa OR74A] gi\|32405654, gi\|... - gi\|32405654\|ref\|XP_323440.1\| hypothetical protein [Neurospora crassa], gi\|28922391\|gb\|EAA31626.1\| va...	491.0	[0..46]	[665..21]
gi\|46125589, gi\|... - gi\|46125589\|ref\|XP_387348.1\| hypothetical protein FG07172.1 [Gibberella zeae PH-1], gi\|42553788\|gb\|E...	491.0	[0..45]	[665..15]
gi\|28950365 - gi\|28950365\|emb\|CAD71020.1\| probable VpsA protein [Neurospora crassa]	490.0	[0..46]	[665..21]
gi\|88178461, gi\|... - gi\|88178461\|gb\|EAQ85929.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	489.0	[0..46]	[665..19]
gi\|159125971 - gi\|159125971\|gb\|EDP51087.1\| vacuolar dynamin-like GTPase VpsA, putative [Aspergillus fumigatus A1163... gi\|66845734, gi\|... - gi\|70985200\|ref\|XP_748106.1\| vacuolar dynamin-like GTPase VpsA [Aspergillus fumigatus Af293], gi\|668...	489.0	[0..46]	[665..16]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR  60
   61 EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV PLVMRLQRSS SPEPEIWLEY 120
  121 NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV 180
  181 NGQPENIYEQ ISGMIMEYIE PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT 240
  241 KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI 300
  301 VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI 360
  361 IGSAKESLLR ILV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.221849
Match:	2akaB
Description:	Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [374-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGDFSEYPDD QNMHCTARLA DMLSQFSDSL QAKPKEVAEF LMDEIKILDE CKCVGLPNFI  60
   61 PRSAFLAILS QHVDGIQDKP VEFINKIWDY IEDVLSSVTA KRSDNFPQIQ SSIKRAGRNL 120
  121 ISKIKEQSVN RVMEIVEMEK LTDYTCNPEY MTSWTQKTSA QESFIDAVVK NENIPDYFSV 180
  181 TGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [558-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVKISHLRKY HAHLLIPAFD MKMRITSYWK IVLRRIVDNL ALYLQLSVKS LVNTRFQKEI  60
   61 VAEMVDPRDG GGVEKMLEES PLVASKREKL QNSIKLLKES KDAVAAIVDQ NC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.920819
Match:	PF02212.9
Description:	No description for PF02212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits