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View Structure Prediction Details

Protein: PANB2_ARATH
Organism: Arabidopsis thaliana
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PANB2_ARATH.

Description E-value Query
Range
Subject
Range
PANB1_ARATH - 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=KPHMT1 ...
404.0 [0..1] [349..1]

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Predicted Domain #1
Region A:
Residues: [1-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASLVRSCC SRASRAITTV RFMSNVPEDT VYGGPKPQNS NQRVTLTQLR QKHRKGEPIT  60
   61 MVTAYDYPSA VHIDTAGIDV CLVGDSAAMV VHGYDTTLPI SLEEMLVHCR AVARGAKRPL 120
  121 LVGDLPFGTY ESSTNQAVDT AVRVLKEGGM DAIKLEGGSP SRITAAKSIV EAGIAVMGHV 180
  181 GLTPQAISVL GGFRPQGKNI ASAVKVVETA MALQEAGCFS VVLECVPPPV AAAATSALNI 240
  241 PTIGIGAGPF CSGQVLVYHD LLGMMQHPHH AKVTPKFCKQ YAQVGEVINK ALLEYKEEVS 300
  301 KHLFPGPSHS PYKISSSDLD GFLSELQKLG LDKAASDAAA SAEKMDHSDS PSSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 1oy0A
Description: Ketopantoate hydroxymethyltransferase PanB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-methyl-2-oxobutanoate hydroxymethyltransferase activity 4.08693637310631 bayes_pls_golite062009
catalytic activity 2.59838799615646 bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity 2.05689968523792 bayes_pls_golite062009
transferase activity 1.07154136609184 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.646649320021871 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.366715189574293 bayes_pls_golite062009
oxo-acid-lyase activity 0.0960362356555544 bayes_pls_golite062009
carbon-carbon lyase activity 0.0846611486307003 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle