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Protein Overview: PANB1_ARATH

General Information:
Name(s) found: PANB1_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=KPHMT1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 347 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: pantothenate biosynthetic process [IGI][ISS]
    Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [IGI][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLTRNCS RFSKAISVRF MSNLPENTVY GGPKPQNPNQ RVTLTHLRQK HRRGEPITVV  60
   61 TAYDYPSAVH LDTAGIDVCL VGDSASMVVH GHDTTLPISL DEMLVHCRAV ARGAKRPLLV 120
  121 GDLPFGTYES SSSQAVDTAV RVLKEGGMDA IKLEGGSASR ITAAKAIVEA GIAVIGHVGL 180
  181 TPQAISVLGG FRPQGRNIAS AVKVVETAMA LQEAGCFSVV LECVPPPVAA AATSALKIPT 240
  241 IGIGAGPFCS GQVLVYHDLL GMMQHPHHAK VTPKFCKQYA NVGEVINKAL MEYKEEVSKK 300
  301 VFPGPSHSPY KITASELDGF LTELQKLGFD KAASAAALAA ENMEPSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..347] PSI-BLAST 90.045757 Ketopantoate hydroxymethyltransferase PanB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-methyl-2-oxobutanoate hydroxymethyltransferase activity
    		•  4.08693637310631 bayes_pls_golite062009
  • catalytic activity
    		•  2.59838799615646 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  2.05689968523792 bayes_pls_golite062009
  • transferase activity
    		•  1.07154136609184 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.646649320021871 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.366715189574293 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.0960362356555544 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.0846611486307003 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle