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View Structure Prediction Details

Protein: gi|110741575, gi...
Organism: Arabidopsis thaliana
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110741575, gi....

Description E-value Query
Range
Subject
Range
gi|3413424 - gi|3413424|emb|CAA06977.1| hypothetical protein [Arabidopsis thaliana]
630.0 [0..1] [470..1]
gi|125534684 - gi|125534684|gb|EAY81232.1| hypothetical protein OsI_36407 [Oryza sativa Indica Group]
gi|125577437, gi... - gi|77551398|gb|ABA94195.1| membrane associated salt-inducible protein, putative, expressed [Oryza sa...
426.0 [0..19] [421..1]
gi|89257625 - gi|89257625|gb|ABD65113.1| hypothetical protein 31.t00019 [Brassica oleracea]
416.0 [0..7] [415..8]
gi|92896425 - gi|92896425|gb|ABE93198.1| Protein of unknown function DUF860, plant [Medicago truncatula]
403.0 [0..17] [359..15]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSIFRSISI RRHSGHRTFA DTSAVEDTYK FVRDRGLDHA VEREKNLRPL LSIKDLIRSE  60
   61 PAKSVPISVI TSQKDSLRVP LRPIEFIRSF PSVFQEFLPG GIGIHPHISL TPEILNHDAD 120
  121 EQLVYGSETY KQGLADRLLK LLMINRINKI PLEILDLLKW DLGLPKDYVE TMVPEFPDYF 180
  181 RVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKLRGCSGE LELVCWSNEH AVSVLEKKAR TLRKGEYTKG SAIAFPMKFS NGFVVDKKMK  60
   61 KWIDDWQKLP YISPYENALH LSATSDESDK WAAAVLHEIM NLFVSKKVEK DAILHLGEFM 120
  121 GLRSRFKRVL HNHPGIFYLS SKLRTHTVVL RDGYKRGMLI ESNELVTSRN RYMKLMNTVK 180
  181 KDNKAVSSSS KKEDKGKVEG EVCDTDAKAE ND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [396-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DISGSDVEDD RQGDFVDDDE DDDEVDQNQD LERGRRNSSP RSGRRSFGNS GSRDKAQSRR  60
   61 SKISLKTEKK RSRMY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle