YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|22331213, gi|...
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22331213, gi|....

Description E-value Query
Range
Subject
Range
NDR1_ARATH - Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
212.0 [0..1] [255..1]

Back

Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIDPEEEL GRKCCTCFFK FIFTTRLGAL ILWLSLRAKK PKCSIQNFYI PALSKNLSSR  60
   61 DNTTLNFMVR CDNPNKDKGI YYDDVHLTFS TINTTTTNSS DLVLVANYTV PKFYQGHKKK 120
  121 AKKWGQVWPL NNQTVLRAVL PNGSAVFRLD LKTHVRFKIV FWKTKWYRRI KVGADVEVNG 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 1xo8A
Description: Solution structure of AT1g01470 from Arabidopsis Thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [181-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGVKANEKEI KMEKSNFWKT HGYWSEFGFD DDVELTGDGA QKKGSKTKKS DSSLPLRSSF  60
   61 PIFVLMNLLV FFAIR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.636 N/A N/A d.222.1 YbaB-like
View Download 0.625 N/A N/A d.9.2 Description not found.
View Download 0.488 N/A N/A d.9.2 Description not found.
View Download 0.467 N/A N/A d.9.2 Description not found.
View Download 0.369 N/A N/A b.40.4 Nucleic acid-binding proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle