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View Structure Prediction Details

Protein: gi|22331213, gi|...
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22331213, gi|....

Description E-value Query
Range
Subject
Range
NDR1_ARATH - Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
212.0 [0..1] [255..1]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIDPEEEL GRKCCTCFFK FIFTTRLGAL ILWLSLRAKK PKCSIQNFYI PALSKNLSSR  60
   61 DNTTLNFMVR CDNPNKDKGI YYDDVHLTFS TINTTTTNSS DLVLVANYTV PKFYQGHKKK 120
  121 AKKWGQVWPL NNQTVLRAVL PNGSAVFRLD LKTHVRFKIV FWKTKWYRRI KVGADVEVNG 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 1xo8A
Description: Solution structure of AT1g01470 from Arabidopsis Thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [181-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGVKANEKEI KMEKSNFWKT HGYWSEFGFD DDVELTGDGA QKKGSKTKKS DSSLPLRSSF  60
   61 PIFVLMNLLV FFAIR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle