| Protein: | VAR3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 758 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAR3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
845.0 | [0..1] | [758..1] |
|
|
320.0 | [0..89] | [630..74] |
|
|
315.0 | [0..89] | [678..125] |
|
|
313.0 | [0..168] | [594..1455] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP 60
61 PLIPTFPIGR FYNHQVRVSA ADFVPSY
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.729 | a.60.8 | HRDC-like |
| View | Download | 0.610 | a.4.1 | Homeodomain-like |
| View | Download | 0.567 | a.186.1 | Description not found. |
| View | Download | 0.556 | a.4.1 | Homeodomain-like |
| View | Download | 0.523 | a.60.8 | HRDC-like |
| View | Download | 0.509 | a.4.1 | Homeodomain-like |
| View | Download | 0.491 | a.47.2 | t-snare proteins |
| View | Download | 0.482 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.481 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.480 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.465 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.449 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.395 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.344 | a.16.1 | S15/NS1 RNA-binding domain |
|
Region A: Residues: [88-254] |
1 11 21 31 41 51
| | | | | |
1 HNQQLPEWTE LLQSLSKAGY FSDSGSISGL ESEFFPGFPD ELLRPALACL ALARERPELL 60
61 EMLSRRDVEV LVENGKPFLF KTGPDSLKRM SLYLRSGLQG IGKLMDMEKA STVDLMRLIL 120
121 SYVVDVASSE ESKQHNKEIM ESSVRSLLSQ IAKMSLRPPE SNVHDTM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [255-399] |
1 11 21 31 41 51
| | | | | |
1 QNQYSDRDGQ GVRSFQNNVE MKRGDWICSR CSGMNFARNV KCFQCDEARP KRQLTGSEWE 60
61 CPQCDFYNYG RNVACLRCDC KRPRDSSLNS ANSDYSSDPE LERRLVENEK KAQRWLSKVA 120
121 QGGSDANSVD TDEDFPEIMP LRKGV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.335 | N/A | N/A | a.24.19 | Description not found. |
| View | Download | 0.274 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.223 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.222 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.210 | N/A | N/A | a.196.1 | Description not found. |
|
Region A: Residues: [400-463] |
1 11 21 31 41 51
| | | | | |
1 NRYVVSTRKP PLERRLANTE NRVATDGNSK RSDDNALGSK TTRSLNEILG SSSSLTSRSD 60
61 DKNV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [464-675] |
1 11 21 31 41 51
| | | | | |
1 SSRRFESSQG INTDFVPFVP LPSDMFAKKP KEETQIGLID NIQVDGFSGG NQNVYQEDKS 60
61 DANHSGKETD RLEKEDHKSE EPARWFKRVT ELHNVSDLES AIPQEISPEK MPMRKGENRF 120
121 VVSRKKDRSL TSPAYKRPED SDFVPFVPFP PDYFAKEKQP KESIDTLPAP ATENVSQVVQ 180
181 QEPREPSINK SDTVAVKIRN GKSLEGSLVK ES
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [676-758] |
1 11 21 31 41 51
| | | | | |
1 DLLDMSEEAK AERWFKRVAE IKNISELSEI PDEDFPSIMP MRKGVNRFVV SKRKTPLERR 60
61 LTSQRHQRNP HITNSDPTGK GDK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.642 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.642 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.524 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.471 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.471 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.438 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.408 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.408 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.385 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.337 | a.81.1 | N-terminal domain of DnaB helicase |
