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View Structure Prediction Details

Protein: U496G_ARATH
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U496G_ARATH.

Description E-value Query
Range
Subject
Range
U496H_ARATH - UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2 SV=1
448.0 [0..2] [408..1]
gi|92868505, gi|... - gi|92871728|gb|ABE80656.1| Protein of unknown function DUF677 [Medicago truncatula], gi|92868505|gb|...
369.0 [0..11] [396..1]
U496A_ORYSJ - UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100 PE=2 SV=1
U496A_ORYSI - UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2 SV=1
367.0 [0..11] [396..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFCGLFSEL IKGHSSSNNN GTNVSLAKTI QTNIRSQYSS DLSSYASACK KYSSLKSFDS  60
   61 LLHERTNSII SSLAAQAKTR S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.863 N/A N/A a.24.28 Description not found.

Predicted Domain #2
Region A:
Residues: [82-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNIESLMEVY GYLLELNQDT VRVIIESKED VLKNNDLKAL VDVYFKSTSK TLDFCNTVEK  60
   61 CVKKAEISQL IIRFAVKQFE TETVDTDLGE SKKKKYVKTL EEMNKFKAMG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.813 N/A N/A a.47.2 t-snare proteins

Predicted Domain #3
Region A:
Residues: [192-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPFDGEFVTQ YKSVYDEQVL LLDELRKLKV KLGKKLRNIK TWRILSNVVF ATA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [245-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVTVFVLSVV AAAMMAPPVL SAVASGLTTP IEVVGMWCNK MWKEYEKAVK RQRGLVLTME  60
   61 LGVQANNVTM VNIKFEVENL SIRISSILKT VNFAVDREEN EMATRFAMQE IKKKVEGFTE 120
  121 KIEEVGERAA NCSKLIALGR LVVLGHILGL HIVEGGAANI ISSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle