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View Structure Prediction Details

Protein: U496G_ARATH
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U496G_ARATH.

Description E-value Query
Range
Subject
Range
U496H_ARATH - UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2 SV=1
448.0 [0..2] [408..1]
gi|92868505, gi|... - gi|92871728|gb|ABE80656.1| Protein of unknown function DUF677 [Medicago truncatula], gi|92868505|gb|...
369.0 [0..11] [396..1]
U496A_ORYSJ - UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100 PE=2 SV=1
U496A_ORYSI - UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2 SV=1
367.0 [0..11] [396..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFCGLFSEL IKGHSSSNNN GTNVSLAKTI QTNIRSQYSS DLSSYASACK KYSSLKSFDS  60
   61 LLHERTNSII SSLAAQAKTR S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.863 N/A N/A a.24.28 Description not found.
View Download 0.820 N/A N/A a.24.28 Description not found.
View Download 0.816 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.726 N/A N/A a.8.4 Description not found.
View Download 0.725 N/A N/A a.24.28 Description not found.
View Download 0.460 N/A N/A f.28.1 Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
View Download 0.456 N/A N/A f.28.1 Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
View Download 0.448 N/A N/A a.30.2 Homodimeric domain of signal transducing histidine kinase
View Download 0.434 N/A N/A a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.417 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.364 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.364 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.332 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.332 N/A N/A a.16.1 S15/NS1 RNA-binding domain

Predicted Domain #2
Region A:
Residues: [82-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNIESLMEVY GYLLELNQDT VRVIIESKED VLKNNDLKAL VDVYFKSTSK TLDFCNTVEK  60
   61 CVKKAEISQL IIRFAVKQFE TETVDTDLGE SKKKKYVKTL EEMNKFKAMG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.813 N/A N/A a.47.2 t-snare proteins
View Download 0.803 N/A N/A a.7.8 GAT domain
View Download 0.795 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.795 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.785 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.785 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.773 N/A N/A a.7.12 Description not found.
View Download 0.740 N/A N/A a.118.8 TPR-like
View Download 0.733 N/A N/A a.47.2 t-snare proteins
View Download 0.718 N/A N/A a.24.3 Cytochromes
View Download 0.392 N/A N/A a.196.1 Description not found.
View Download 0.389 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.332 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.292 N/A N/A f.21.2 Fumarate reductase respiratory complex transmembrane subunits

Predicted Domain #3
Region A:
Residues: [192-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPFDGEFVTQ YKSVYDEQVL LLDELRKLKV KLGKKLRNIK TWRILSNVVF ATA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [245-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVTVFVLSVV AAAMMAPPVL SAVASGLTTP IEVVGMWCNK MWKEYEKAVK RQRGLVLTME  60
   61 LGVQANNVTM VNIKFEVENL SIRISSILKT VNFAVDREEN EMATRFAMQE IKKKVEGFTE 120
  121 KIEEVGERAA NCSKLIALGR LVVLGHILGL HIVEGGAANI ISSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle