| Protein: | GPDL1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 763 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPDL1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
636.0 | [0..1] | [748..1] |
|
|
562.0 | [0..22] | [761..9] |
|
|
562.0 | [0..22] | [761..9] |
|
Region A: Residues: [1-358] |
1 11 21 31 41 51
| | | | | |
1 MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG 60
61 LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD LNLANASTID RVYPNREKSY 120
121 SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL 180
181 NVQHDAFYEQ QNLSMSSFLL SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK 240
241 EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ 300
301 VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGR
|
| Detection Method: |  |
| Confidence: | 7.78 |
| Match: | 1ydyA |
| Description: | Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [359-672] |
1 11 21 31 41 51
| | | | | |
1 NATKQVDFLV ISKDGASGDY PGCTDLAYEK AIKDGADVID CSVQMSSDGV PFCLRSIDLR 60
61 NSIAALQNTF SNRSTSVPEI SSVPGIFTFS LTWPEIQSLT PAISNPFRVY RIFRNPREKN 120
121 SGKLISLSQF LDLAKTYTSL SGVLISVENA AYLREKQGLD VVQAVLDTLT EAGYSNGTTT 180
181 TKVMIQSTNS SVLVDFKKQS KYETVYKIEE TIGNIRDSAI EDIKKFANAV VINKDSVFPN 240
241 SDSFLTGQTN VVERLQKSQL PVYVELFRNE FVSQAYDFFS DATVEINAYI YGAGINGTIT 300
301 EFPFTAARYK RNRC
|
| Detection Method: | |
| Confidence: | 65.69897 |
| Match: | 1t8qA |
| Description: | Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [673-763] |
1 11 21 31 41 51
| | | | | |
1 LGREEVPPYM LPVNPGGLLN VMSPLSLPPA QAPNQDFIEA DVTEPPLSPV IAKAPTSTPG 60
61 TPSTIAQAPS GQTRLKLSLL LSVFFLSLLL L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.713 | a.7.7 | BAG domain |
| View | Download | 0.360 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.360 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.346 | a.7.7 | BAG domain |
| View | Download | 0.333 | a.74.1 | Cyclin-like |
| View | Download | 0.333 | a.74.1 | Cyclin-like |
| View | Download | 0.310 | a.74.1 | Cyclin-like |
| View | Download | 0.310 | a.74.1 | Cyclin-like |
| View | Download | 0.308 | a.47.2 | t-snare proteins |
| View | Download | 0.308 | a.47.2 | t-snare proteins |
| View | Download | 0.274 | a.240.1 | Description not found. |
| View | Download | 0.250 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.220 | a.7.8 | GAT domain |
