| Protein: | gi|4262228, gi|2... |
| Organism: | Arabidopsis thaliana |
| Length: | 716 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4262228, gi|2....
| Description | E-value | Query Range |
Subject Range |
|
|
370.0 | [0..1] | [713..370] |
|
|
366.0 | [0..3] | [715..288] |
|
|
366.0 | [0..2] | [715..310] |
|
|
366.0 | [0..1] | [716..85] |
|
Region A: Residues: [1-335] |
1 11 21 31 41 51
| | | | | |
1 MLASLIIFVA LLCNVTVISG LNDEGFALLT FKQSVHDDPT GSLNNWNSSD ENACSWNGVT 60
61 CKELRVVSLS IPRKNLYGSL PSSLGFLSSL RHLNLRSNRF YGSLPIQLFH LQGLQSLVLY 120
121 GNSFDGSLSE EIGKLKLLQT LDLSQNLFNG SLPLSILQCN RLKTLDVSRN NLSGPLPDGF 180
181 GSAFVSLEKL DLAFNQFNGS IPSDIGNLSN LQGTADFSHN HFTGSIPPAL GDLPEKVYID 240
241 LTFNNLSGPI PQTGALMNRG PTAFIGNTGL CGPPLKDLCQ GYQLGLNASY PFIPSNNPPE 300
301 DSDSTNSETK QKSSGLSKSA VIAIVLCDVF GICLV
|
| Detection Method: |  |
| Confidence: | 17.522879 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-407] |
1 11 21 31 41 51
| | | | | |
1 GLLFTYCYSK FCACNRENQF GVEKESKKRA SECLCFRKDE SETPSENVEH CDIVPLDAQV 60
61 AFNLEELLKA SA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.412 | d.52.8 | Description not found. |
| View | Download | 0.399 | a.159.5 | Description not found. |
| View | Download | 0.360 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.360 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.344 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.327 | c.98.1 | MurE/MurF N-terminal domain |
| View | Download | 0.327 | c.98.1 | MurE/MurF N-terminal domain |
| View | Download | 0.305 | d.88.1 | SRF-like |
| View | Download | 0.305 | d.88.1 | SRF-like |
| View | Download | 0.302 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.275 | a.159.5 | Description not found. |
| View | Download | 0.264 | a.4.1 | Homeodomain-like |
| View | Download | 0.201 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
|
Region A: Residues: [408-716] |
1 11 21 31 41 51
| | | | | |
1 FVLGKSGIGI VYKVVLENGL TLAVRRLGEG GSQRFKEFQT EVEAIGKLKH PNIASLRAYY 60
61 WSVDEKLLIY DYVSNGNLAT ALHGKPGMMT IAPLTWSERL RIMKGIATGL VYLHEFSPKK 120
121 YVHGDLKPSN ILIGQDMEPK ISDFGLARLA NIAGGSSPTI QSNRIIQTDQ QPQERQQHHH 180
181 KSVSSEFTAH SSSGSYYQAP ETLKMVKPSQ KWDVYSYGII LLELIAGRSP AVEVGTSEMD 240
241 LVRWVQVCIE EKKPLCDVLD PCLAPEAETE DEIVAVLKIA ISCVNSSPEK RPTMRHVSDT 300
301 LDRLPVAGD
|
| Detection Method: | |
| Confidence: | 63.0 |
| Match: | 2qkwB |
| Description: | No description for 2qkwB was found. |
