YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15230321, gi\|...
Organism:	Arabidopsis thaliana
Length:	648 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230321, gi|....

Description	E-value	Query Range	Subject Range
gi\|37223342 - gi\|37223342\|gb\|AAQ90244.1\| DEM2 [Lycopersicon esculentum]	850.0	[0..1]	[647..1]
gi\|7485653, gi\|4... - pir\|\|T05991 hypothetical protein F17M5.160 - Arabidopsis thaliana, gi\|7270288\|emb\|CAB80057.1\| Dem-l...	815.0	[0..1]	[647..1]
gi\|92871584 - gi\|92871584\|gb\|ABE80529.1\| Quinoprotein amine dehydrogenase, beta chain-like [Medicago truncatula]	811.0	[0..1]	[647..1]
gi\|50915460, gi\|... - gi\|51964468\|ref\|XP_507019.1\| PREDICTED OSJNBa0054K20.36 gene product [Oryza sativa (japonica cultiva...	780.0	[0..1]	[648..1]
gi\|83766175 - gi\|83766175\|dbj\|BAE56318.1\| unnamed protein product [Aspergillus oryzae] gi\|169767698 - gi\|169767698\|ref\|XP_001818320.1\| hypothetical protein [Aspergillus oryzae RIB40]	722.0	[0..1]	[647..146]
gi\|115384826, gi... - gi\|115384826\|ref\|XP_001208960.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	714.0	[0..1]	[646..602]
gi\|88176071, gi\|... - gi\|88176071\|gb\|EAQ83539.1\| hypothetical protein CHGG_09943 [Chaetomium globosum CBS 148.51], gi\|1162...	712.0	[0..3]	[647..153]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSQSREDR ISESDTESDS DYYEEEDEDQ YDDAKKQGSS SVSGTRPSDS SSSSGPTDSS  60
   61 SLDIEQKLKA LKLKYPSSSS VTPKMKNAVK LYRHIGGNTP KAKWIVSDKM TSYKFVKTSS 120
  121 VDGEDIDDYD DCEESGEGGE SFWFLGVGTK VKARVSTDMQ LKMFGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRVDFVSNG VWALKFLTDE DYRKFVTRFQ DYLFENVYKI RASEENRVKV YGKDFIGWAN  60
   61 PEAADDSMWE DAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPEEEETQG KRNTDLTEEF EEVANGGVQS LTLGALDNSF LVNDYGVQVY RNMERGIHGK  60
   61 GVCVRFDSGN SKF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [313-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGSSQTTPN KALLMRAETN MMLMSPAKQG KPNSTGVKQL DIESGKIVTE WKFEKDGTEI  60
   61 TMRDITNDTK GSQLDPSEST FLGLDDNRLC QWDMRDRRGI VQNIDSPILE WTQGHQFSRG 120
  121 TNFQCFATTG DGSIVVGSLD GKIRLYSKTS MRMAKTAFPG LGSPITHVDV SYDGKWILGT 180
  181 TDTYLVLICT LFTDKNGLTK T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [514-648]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFSGRMGNKI PAPRLLKLTP LDSHLAGKDN KFHGGHFSWV TESGKQERHI VATVGKFSVI  60
   61 WDLERVKNSA HECYRNQQGL KSCYCYKILL KDESIVESRF MHDNFSFSGN KSPEAPLVVA 120
  121 TPLKVSSISL SGKRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits