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View Structure Prediction Details

Protein: NFYA2_ARATH
Organism: Arabidopsis thaliana
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|2398523 - gi|2398523|emb|CAA74049.1| Transcription factor [Arabidopsis thaliana]
396.0 [0..1] [295..1]
gi|45861221 - gi|45861221|gb|AAS78487.1| CCAAT-box transcription factor complex WHAP13 [Triticum aestivum]
199.0 [0..22] [218..17]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMQTVREGL FSAPQTSWWT AFGSQPLAPE SLAGDSDSFA GVKVGSVGET GQRVDKQSNS  60
   61 ATHLAFSLGD VKSPRLVPKP HGATFSMQSP CLELGFSQPP IYTKYPYGEQ QYYGVVSAYG 120
  121 SQSRVMLPLN M

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETEDSTIYVN SKQYHGIIRR RQSRAKAAAV LDQKKLSSRC RKPYMHHSRH LHALRRPRGS  60
   61 GGRFLNTKSQ NLENSGTNAK KGDGSMQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.60206
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQSQPKPQQS NSQNSEVVHP ENGTMNLSNG LNVSGSEVTS MNYFLSSPVH SLGGMVMPSK  60
   61 WIAAAAAMDN GCCNFKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle