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View Structure Prediction Details

Protein: CISY5_ARATH
Organism: Arabidopsis thaliana
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CISY5_ARATH.

Description E-value Query
Range
Subject
Range
CISY_RHIME - Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2
CISY_RHIME - Citrate synthase OS=Rhizobium meliloti (strain 1021) GN=gltA PE=3 SV=2
487.0 [0..3] [433..1]

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Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMQDLKSQM QEIIPEQQDR LKKLKSEQGK VPVGNITVDM VLGGMRGMTG LLWETSLLDA  60
   61 DEGIRFRGMS IPECQKILPS AESGEEPLPE SLLWLLLTGK VPTKEQANAL STELAHRAAV 120
  121 PAIDALPSTA HPMTQFASGV MALQVQSEFQ KAYEQGDISK SKYWEPTFED ALNLIARVPV 180
  181 VASYVYRRMY KDGSIIPLDD SLDYGANFSH MLGFDSPQMK ELMRLYVTIH SDHEGGNVSA 240
  241 HAGHLVGSAL SDPYLSFAAA LNGLAGPLHG LANQEVLLWI KLVVEECGES ISKEQLKDYV 300
  301 WKTLNSGKVV PGYGHGVLRK TDPRYICQRE FALKHLPDDP LFQLVSKLYE VVPPILTELG 360
  361 KVKNPWPNVD AHSGVLLNYY GLTEARYYTV LFGVSRSLGI CSQLIWDRAL GLPLERPKSV 420
  421 NMDWLDNFTR LNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 135.0
Match: 1ctsA
Description: CRYSTALLOGRAPHIC REFINEMENT AND ATOMIC MODELS OF TWO DIFFERENT FORMS OF CITRATE SYNTHASE AT 2.7 AND 1.7 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
citrate (Si)-synthase activity 7.90380661459876 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 7.35970609422108 bayes_pls_golite062009
transferase activity, transferring acyl groups 4.98392594633005 bayes_pls_golite062009
catalytic activity 2.51855037019879 bayes_pls_golite062009
transferase activity 1.52308910034898 bayes_pls_golite062009
binding 1.15467737113069 bayes_pls_golite062009
protein binding 0.210158634792359 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle