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View Structure Prediction Details

Protein: gi|6850845, gi|1...
Organism: Arabidopsis thaliana
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6850845, gi|1....

Description E-value Query
Range
Subject
Range
gi|28901450, gi|... - gi|28901450|ref|NP_801105.1| putative prolyl aminopeptidase [Vibrio parahaemolyticus RIMD 2210633], ...
gi|28809997 - gi|28809997|dbj|BAC62938.1| putative prolyl aminopeptidase [Vibrio parahaemolyticus RIMD 2210633]
326.0 [0..77] [513..8]

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Predicted Domain #1
Region A:
Residues: [1-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATHALVTP IPKLTAFVLS LSTTPSRLSG SVPGLIDFYR RRRFCRVITS MAEAGSVYVD  60
   61 VAGESKSEHV TGKWFSVPEL RLRDHRFIVP LDYSKSSPKI TVFAREIVAV GKEEQAMPYL 120
  121 LYLQGGPGFE GPRPSEASGW IQRACEEFRV VLLDQRGTGL STPLTCSSML QFKSAKELAD 180
  181 YLVHFRADNI VKDAEFIRVR LVPKADPWTI LGQSFGGFCA LTYLSFAPEG LKQVLITGGI 240
  241 PPIGKACTAD DVYEAGFEQV ARQNEKYYKR FPQDIEIVRE LVNYLAESEG GGVPLPSGGI 300
  301 LTPKGLQTLG LSGLGSSTGF ERLHYMLERV WDPILVTGAP KCISQFFLNA FESWHSFDTN 360
  361 PLYALLHEAI YCEGASSGWS AHRLRDKYEY KFDAMKAVKE SQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1cqzA
Description: Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.54323107406855 bayes_pls_golite062009
catalytic activity 1.76673721118052 bayes_pls_golite062009
peptidase activity 1.12259137179218 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.808794364499195 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.112278861211575 bayes_pls_golite062009
serine hydrolase activity 0.08085624250764 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [403-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLFTGEMIF PWMFDEIHAL KPFKAAADLL AKKEDWPPLY DVPRLQNNKV PVAAAVYYED  60
   61 MYVNFKLVTE TASHISGIRL WVTNEFMHSG LRDAGRQIID HLLGMINGKK PLF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle