YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR1_ARATH
Organism:	Arabidopsis thaliana
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25518436, gi\|... - gi\|9797761\|gb\|AAF98579.1\|AC013427_22 Contains similarity to PIR7A protein from Oryza sativa gb\|Z3427...	168.0	[0..1]	[118..379]
gi\|4680212 - gi\|4680212\|gb\|AAD27575.1\|AF114171_17 hypothetical protein [Sorghum bicolor]	121.0	[0..5]	[118..100]
SP1L4_ORYSJ - Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica GN=Os04g0578300 PE=3 SV=1	116.0	[0..14]	[116..17]
gi\|125549435, gi... - gi\|125549435\|gb\|EAY95257.1\| hypothetical protein OsI_17080 [Oryza sativa Indica Group], gi\|116309686...	114.0	[0..14]	[116..17]
gi\|106879585 - gi\|106879585\|emb\|CAJ38376.1\| putative nitrilase-associated protein [Plantago major]	110.0	[0..1]	[118..25]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS  60
   61 VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK VHAAPGGGSS LDYLFTGGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits