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View Structure Prediction Details

Protein: gi|9758195, gi|1...
Organism: Arabidopsis thaliana
Length: 1149 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|9758195, gi|1....

Predicted Domain #1
Region A:
Residues: [1-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKPSFLEDV EVIKLITKSR EEFVKGNHCK ALEILEDLIF DHKKDKDSWF LHIKQGTMFV  60
   61 KLEDITENPD VGFAYLVASV QCYSQDVILS RLCAMGFYNL AKQLGSVSYY KQCVKKSKQD 120
  121 LSVTYPENTS PVARSMLQEL KKDMNKEFNT LIRDAERMIA GAKTSPLSSE SKVWEPKKSS 180
  181 DLVDDEIQEL RSYWMGLDIK IKRDFMKVSI AKLKSFVEGV HNREGRDVFE KVLTSAKADR 240
  241 KWTFWMC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 1wao1
Description: PP5 structure
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [248-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSKCLKKLSS AEECKNHFEQ QHDADFKNAS KKDMVQRIGK DWARKISVGA WEPVDTVAAV  60
   61 EMIKNRLADV KAFAPKNGWS EEWPLAADED RSKLLKEIKL LLVSLCDHKI LPSSIREWLM 120
  121 RFPVQHLAKL DVSEQSLIDS HLVGTPQSIC FLESHELNQI LDFLKTIKCK RNDGTDLVCR 180
  181 AVNSFLDHTR VKEKID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [444-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDPQFSFLLL DKRLLKCKDV PFDDEGTINV FDPNAHYAKA PAQGDDIISW LTDYNSVDTI  60
   61 FPRPIREHNF GIWVAVLKAV QFTFSFLGKK YAKKYLVLDY DAALTVVENL CMSEDERRKN 120
  121 LLEDQWNKYA SLLCDSCEER VSENSITANF FLWAVRDVLQ GASHPTFDFL DSEDCMNLIR 180
  181 QRKSLGDDIA LKSIHHLKSV VTHKVLLIDS KILLIDNSRI TLLTNLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [671-746]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLSAFDNRTY ILRLLKPFLL NEIVNMESNA KSDIAAAYLL LEEEKKSRSK KKKNNKRNST  60
   61 SLSTPLDKTV EHEPSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [747-1149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEPGVTSPS LKIVKEDFME PEDTRAGERG RLEISSNTDN QEEATKFDPD MQNMPREDSL  60
   61 SEHMESASGE ASARYNSALD MTLKLILDLF TFLFSLISSQ KHVVLQALLN IKILKEYLMH 120
  121 NMQPFQDHLE EPVPSALQTL FTAFVSEDIK IEGVYSCLLS DLLVSVEEMF SMVCVEKLSD 180
  181 ADAAEVVVAI FEFWHCWKYR ERESLVTRLF TLEENERMSC IKCRSRPNYP EQRSHGIVVA 240
  241 ADSIRDLKCA LGNMKFVDIL KVTRMEYKML CDTRSGGCGR TNIVHHIISR CPPIFTIVLE 300
  301 WEKSETEKEI SETTKALEWE IDISRLYEGL EPNTNYRLVS MVGCSEVEEE HICIAYEKNR 360
  361 WVNLKRESLV GEDIGNWKSV VRFCGEKKVR PEILFYEAAR WMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 2gfoA
Description: No description for 2gfoA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle