| Protein: | HRD3A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 678 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRD3A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
455.0 | [0..2] | [673..70] |
|
|
390.0 | [0..24] | [585..284] |
|
|
356.0 | [0..1] | [678..1] |
|
|
336.0 | [0..73] | [651..185] |
|
|
335.0 | [0..49] | [649..218] |
|
|
335.0 | [0..49] | [649..180] |
|
|
333.0 | [0..49] | [649..180] |
|
|
333.0 | [0..49] | [649..180] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MRILSYGIVI LSLLVFSFIE FGVHARPVVL VLSNDDLNSG GDDNGVGESS DFDEFGESEP 60
61 KSEEEL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-519] |
1 11 21 31 41 51
| | | | | |
1 DPGSWRSIFE PDDSTVQAAS PQYYSGLKKI LSAASEGNFR LMEEAVDEIE AASSAGDPHA 60
61 QSIMGFVYGI GMMREKSKSK SFLHHNFAAA GGNMQSKMAL AFTYLRQDMH DKAVQLYAEL 120
121 AETAVNSFLI SKDSPVVEPT RIHSGTEENK GALRKSRGEE DEDFQILEYQ AQKGNANAMY 180
181 KIGLFYYFGL RGLRRDHTKA LHWFLKAVDK GEPRSMELLG EIYARGAGVE RNYTKALEWL 240
241 TLAAKEGLYS AFNGIGYLYV KGYGVDKKNY TKAREYFEKA VDNEDPSGHY NLGVLYLKGI 300
301 GVNRDVRQAT KYFFVAANAG QPKAFYQLAK MFHTGVGLKK NLEMATSFYK LVAERGPWSS 360
361 LSRWALEAYL KGDVGKALIL YSRMAEMGYE VAQSNAAWIL DKYGERSMCM GVSGFCTDKE 420
421 RHERAHSLWW RASEQGNEHA ALLIGDAYYY GRG
|
| Detection Method: | |
| Confidence: | 28.30103 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [520-605] |
1 11 21 31 41 51
| | | | | |
1 TERDFVRAAE AYMHAKSQSN AQAMFNLGYM HEHGQGLPFD LHLAKRYYDE SLQSDAAARL 60
61 PVTLALASLW LRRNYADTVL VRVVDS
|
| Detection Method: | |
| Confidence: | 38.69897 |
| Match: | 1ouvA |
| Description: | Helicobacter cysteine rich protein C (HcpC) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [606-678] |
1 11 21 31 41 51
| | | | | |
1 LPEVYPKVET WIENVVFEEG NATILTLFVC LITILYLRER QRRQVVVVAD PVAADVAQPL 60
61 DADVAQHLAA FPR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
